Publications/Reports – Blueprint

Blueprint > Publications/Reports

Publications/Reports

8.1 Publications in press / published (peer-reviewed publications arising from the project research with authors from, at least, two different participating states)

  1. Alneberg J, Bjarnason BS, de Bruijn I, Schirmer M, Quick J, Ijaz UZ, Lahti L, Loman NJ, et al. 2014. Binning metagenomic contigs by coverage and composition. Nature Methods 11, 1144-1146 
  2. Logue JB, Stedmon CA, Kellerman AM, Nielsen NJ, Andersson AF, Laudon H, Lindström ES, Kritzberg ES. 2015. Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter. ISME J. 10: 533-545
  3. Teikari J, Österholm J, Kopf M, Battchikova N, Wahlsten M, Aro EM, Hess WR, Sivonen K. 2015. Transcriptomic and proteomic profiling of Anabaena sp. strain 90 under inorganic phosphorus stress. Appl Environ Microbiol 81:5212–5222.
  4. Hu Y, Karlson B, Charvet S, Andersson AF. Diversity of Pico-to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea. 2016. Front Microbiol.; 7: 679.
  5. Vaquer-Sunyer R, Reader HE, Muthusamy S, Lindh MV, Pinhassi J, Conley DJ, and Kritzberg ES. 2016. Effects of wastewater treatment plant effluent inputs on planktonic metabolic rates and microbial community composition in the Baltic Sea. Biogeosciences. 13:4751–4765. doi: 10.5194/bg-13-4751-2016
  6. Traving SJ, Rowe O, Jakobsen NM, Sørensen H, Dinasquet J, Stedmon CA, Andersson A, Riemann L. 2017.  The effect of increased loads of dissolved organic matter on estuarine microbial community composition and function. Frontiers in Microbiology 8: 351
  7. Alneberg J, Sundh J, Bennke C, Beier S, Lundin D, Hugerth LW, Pinhassi J, Kisand V, Riemann L, Jürgens K, Labrenz M, Andersson AF. 2018. BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea. Scientific Data volume 5, Article number: 180146 (2018)
  8. Happel E, Bartl I, Voss M, Riemann L. Extensive nitrification and dominance of active bacterial ammonia oxidizers in two contrasting coastal systems of the Baltic Sea. 2018. In press, Environmental Microbiology
  9. Teikari JE, Hou S, Wahlsten M, Hess WR, Sivonen K. 2018. Comparative genomics of the Baltic Sea toxic cyanobacteria Nodularia spumigena UHCC 0039 and its response to varying salinity. Frontiers in Microbiology, 9: 356.
  10. Teikari JE, Fewer DP, Shrestha R, Hou S, Leikoski N, Mäkelä M, Simojoki A, Hess WR, Sivonen K. 2018. Strains of the toxic and bloom-forming Nodularia spumigena (cyanobacteria) can degrade methylphosphonate and release methane. ISME Journal, 12: 1619–1630.
  11. Markussen T, Happel EM, Teikari JE, Huchaiah V, Alneberg J, Andersson AF, Sivonen K, Riemann L, Mathias Middelboe M, Kisand V 2018. Coupling biogeochemical process rates and metagenomic blueprints of coastal bacterial assemblages in the context of environmental change. In press, Environmental Microbiology

12.1 Publications in press / published that acknowledge BONUS and BONUS BLUEPRINT (but do not have authors from at least two different participating states)

  1. Muthusamy S, Baltar F, González JM, and Pinhassi J. 2014. Dynamics of metabolic activities and gene expression in the Roseobacter clade bacterium Phaeobacter sp. MED193 during growth with thiosulfate. Applied and Environmental Microbiology. 80(22):6933-6942.
  2. Hugerth LW, Wefer HA, Lundin S, Jakobsson HE, Lindberg M, Rodin S, Engstrand L, Andersson AF. 2014. DegePrime, a Program for Degenerate Primer Design for Broad-Taxonomic-Range PCR in Microbial Ecology Studies. Applied and Environmental Microbiology 80(16):5116-5123.
  3. Hugerth LW, Muller EEL, Hu YOO, Lebrun LAM, Roume H, Lundin D, Wilmes P, Andersson AF. 2014. Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia. PLoS ONE 9(4): e95567.
  4. Lindh MV, Sjöstedt J, Andersson AF, Baltar F, Hugerth L, Lundin D, Muthusamy S, Legrand C, Pinhassi J. 2015. Disentangling seasonal bacterioplankton population dynamics by high frequency sampling. Environmental Microbiology. 17(7):2459–2476.
  5. Lindh MV, Figueroa D, Sjöstedt J, Baltar F, Lundin D, Andersson A, Legrand C, Pinhassi J. 2015. Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities. Frontiers in Microbiology. 6:Article 223
  6. Leisner JJ, Jørgensen NOG, Middelboe M. 2015. Predation and selection for antibiotic resistance in natural environments. Evolutionary Applications. doi:10.1111/eva.12353
  7. Hagström Å, Azam F, Berg C, and Zweifel UL.  Culture the Marine Microbiome. Journal of Aquatic Microbial Ecology SPECIAL ISSUE 6: Progress and perspectives in aquatic microbial ecology: Highlights of the SAME 14 conference, Uppsala, Sweden, 2015. Editors: Paul A. del Giorgio, Fereidoun Rassoulzadegan, Eva Lindström. In press.
  8. Bunse C, Lundin D, Karlsson CMG, Akram N, Vila-Costa M, Palovaara J, Svensson L, Holmfeldt K, González JM, Calvo E, Pelejero C, Marrasé C, Dopson M, Gasol JM, Pinhassi J. 2016. Response of marine bacterioplankton pH homeostasis gene expression to elevated CO2. Nature Climate Change 6: 483-487
  9. Bombar D, Paerl R, Riemann L. 2016. Marine Non-Cyanobacterial Diazotrophs: Moving beyond Molecular Detection. Trends Microbiol. 24(11): 916-927. doi: 10.1016/j.tim.2016.07.002
  10. Lindh MV, Sjöstedt J, Casini M, Andersson A, Legrand C, and Pinhassi J. 2016. Local environmental conditions shape generalist but not specialist components of microbial metacommunities in the Baltic Sea. Frontiers in Microbiology. 7:Article 2078. doi: 10.3389/fmicb.2016.02078
  11. Traving SJ, Bentzon-Tilia M, Knudsen-Leerbeck H, Mantikci M, Hansen JLS, Stedmon CA, Sørensen H, Markager S and Riemann L. 2016. Coupling bacterioplankton populations and environment to community function in coastal temperate waters. Frontiers in Microbiology, 7: 1533
  12. Lindh MV, Sjöstedt J, Ekstam B, Casini M, Lundin D, Hugerth LW, Hue Y, Andersson AF, Andersson A,  Legrand C, and Pinhassi J. 2017. Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers. Environmental Microbiology. In Press. DOI: 10.1111/1462-2920.13650
  13. Muthusamy, S., D. Lundin, R. M. M. Branca, F. Baltar, J. M. González, J. Lehtiö and J. Pinhassi. 2017. Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria. Environmental Microbiology. 19(6):2301–2319. doi:10.1111/1462-2920.13725
  14. Bunse, C. and J. Pinhassi. 2017. Marine bacterioplankton seasonal succession dynamics. Trends in Microbiology. 25(6):464-505. DOI: http://dx.doi.org/10.1016/j.tim.2016.12.013
  15. Beier, S., Shen, D., Schott, T., Jürgens, K. 2017. Metatranscriptomic data reveal the effect of different community properties on multifunctional redundancy. Molec. Ecol. 26: 6813-6826.
  16. Middelboe M, Brussaard CPD. 2017. Marine viruses: Key players in marine ecosystems. Viruses 9 (10), 302, 1-6. Doi: 10.3390/v9030049.
  17. Bennke, C. M., Pollehne, F., Müller, A., Hansen, R., Kreikemeyer, B.,  Labrenz, M. 2018. The distribution of phytoplankton in the Baltic Sea assessed by a prokaryotic 16S rRNA gene primer system. J Plankton Res, doi:10.1093/plankt/fby008.
  18. Shen, D., Jürgens, K., Beier, S. 2018. Experimental insights into the importance of ecologically dissimilar bacteria to community assembly along a salinity gradient. Environ. Microbiol. 20: 1170-1184.
  19. Paerl RW, Bertrand E, Rowland E, Scatt P, Mehiri M, Niehaus T, Hanson AD, Riemann L, Yves-Bouget F. 2018. Carboxythiazole is a key microbial nutrient currency and critical component of thiamin biosynthesis. Scientific Reports, 8: 5940
  20. Benavides M, Bonnet S, Berman-Frank I, Riemann L. 2018. Deep into oceanic N2 fixation. Frontiers in Marine Science, 5:108
  21. Paerl RW, Hansen T, Henriksen NNSE, Olesen AK, Riemann L. 2018. N-fixation and related O2 constraints on model marine diazotroph Pseudomonas stutzeri BAL361. Aquatic Microbial Ecology, 81: 125-136
  22. Bombar D, Paerl RW, Anderson R, Riemann L. 2018. Filtration via conventional GF/F -filters in 15N2 tracer assays fails to capture all nitrogen-fixing prokaryotes. Frontiers in Marine Science 5:6
  23. Shiozaki T, Bombar D, Riemann L, Sato M, Hashihama F, Kodama T, Tanita I, Takeda S, Saito H, Hamasaki K, Furuya K. 2018. Linkage between dinitrogen fixation and primary production in the oligotrophic South Pacific Ocean. Global Biogeochemical Cycles, in press